drcme.tsne.dual_modal_tsne

drcme.tsne.dual_modal_tsne(ephys_df, morph_df, relative_ephys_weight=1.0, perplexity=25, n_iter=20000)[source]

Perform t-SNE on electrophysiology and morphology data sets

Parameters

  • ephys_df (DataFrame) – Electrophysiology data set

  • morph_df (DataFrame) – Morphology data set

  • relative_ephys_weight (float, optional) – Relative weighting of electrophysiology data

  • perplexity (float) – t-SNE perplexity parameter

  • n_iter (int) – Maximum number of iterations for t-SNE optimization

Returns

Contains “x” and “y” coordinates for 2D t-SNE embedding for samples that exist in both ephys_df and morph_df

Return type

DataFrame